Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs112720640 chr1:167512477 C/T 0.00013 494 30.93 30.9 15.77 KM Plot
PRAD rs112733189 chr1:1159729 T/G 2.58E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs112793476 chr4:187812111 A/C 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs112794807 chr4:165646631 GCAGGCTGGACAA/G 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs112816977 chr3:184190620 C/T 0.000172 475 32.27 28.23 30.02 KM Plot
PRAD rs112819899 chr5:154231179 T/C 8.33E-9 493 30.23 33.27 20.47 KM Plot
PRAD rs112892500 chr16:22247276 G/A 3.44E-9 479 30.3 35.13 28.25 KM Plot
PRAD rs112913435 chr4:187812462 G/A 2.34E-6 480 31.13 28.43 26.8 KM Plot
PRAD rs1129212 chr16:87731878 A/G 1.04E-6 494 26.1 30.98 30.93 KM Plot
PRAD rs112957687 chr12:10735006 C/A 4.81E-5 488 30.8 33.13 19.93 KM Plot
PRAD rs11311569 chr21:36959520 TA/T 2.28E-5 487 30.5 30.2 31.18 KM Plot
PRAD rs113206229 chr12:10724532 C/T 5.74E-5 488 30.8 32.77 19.93 KM Plot
PRAD rs113206287 chr1:1159020 A/G 2.84E-10 485 31.27 30.73 13.73 KM Plot
PRAD rs113220577 chr19:49983010 G/A 7.14E-7 479 30.3 33.13 24.25 KM Plot
PRAD rs113226566 chr17:37810439 A/G 5.91E-6 489 30.87 32.45 28.63 KM Plot